Package index • SpaNorm

All functions

HumanDLPFC: Human dorsolateral prefrontal cortex (DLPFC) visium sample

SpaNorm(): Spatially-dependent normalisation for spatial transcriptomics data

`$`(<SpaNormFit>): An S4 class to store a SpaNorm model fit

SpaNormPCA(): GLM-based (SpaNorm) PCA

SpaNormSVG(): Model-based spatially variable gene (SVG) calling

fastSizeFactors(): Filter genes based on expression

filterGenes(): Filter genes based on expression

plotCovariate(): Diagnostic plot of predicted expression for a covariate

plotSpatial(): Plot spatial transcriptomic annotations per spot

topSVGs(): Export top SVG results to a data frame