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SpaNorm 1.2.0

  • Added model-based spatially variable gene (SVG) calling.
  • Added spatial visualisation funciton plotSpatial to visualise colData, gene expression, and reduced dimensions.
  • Added spatial visualisation function plotCovariate to visualise the biolgy, batch, and library size functions estimated by SpaNorm.
  • Dynamic calculation of df.tps for rectangular tissue sections.
  • Allow separate specification of df.tps for biology and library size.
  • Added GLM-PCA approximation through the SpaNormPCA function. The null model is considered to consist of the library size effects, batch effects, and the gene mean.

SpaNorm 1.0.0

  • Initial Bioconductor submission.