gene-set enrichment analysis

A talk on using vissE to analyse transcriptomic data

This masterclass includes an introductory lecture on gene-set enrichment analysis followed by a demonstration of the vissE and singscore tools we developed.

A talk on the inner workings of vissE

This workshop demonstrates a workflow for single-sample gene-set enrichment analysis.

This work proposes an extension to our robust single-sample molecular phenotyping method, singscore, that works on targeted transcriptomic panels with as few as 5 endogenous control genes, thus taking the approach a step closer to the clinic.

This workflow demonstrates the versatility of singscore by applying it to infer mutation status in cancer

singscore is a robust rank-based method to compute molecular phenotypes scores for individual samples such as those originating from an individual patient in the clinic