Pseudo-bulked single-cell breast cancer reference dataset

Source: R/XeniumSpatialAnalysisWorkshop.R

A pseudo-bulked single-cell RNA-seq breast cancer dataset from the study by Wu et al., Nat Genetics, 2021. The original dataset has been subsetted to the genes present in the 10x Xenium dataset.

ref_wu

Format

A SingleCellExperiment object.

References

Wu SZ, Al-Eryani G, Roden DL, Junankar S, Harvey K, Andersson A, Thennavan A, Wang C, Torpy JR, Bartonicek N, Wang T. A single-cell and spatially resolved atlas of human breast cancers. Nature genetics. 2021 Sep;53(9):1334-47. https://www.weizmann.ac.il/sites/3CA/breast